Bridgedb Org

BridgeDB is a biological identifier mapping service that helps researchers convert between different gene, protein, and metabolite database identifiers. Map identifiers across multiple biological databases and retrieve cross-references for bioinformatics research.

This Bridgedb Org MCP server is compatible with any MCP client including Claude Desktop, Cursor, and other Model Context Protocol implementations.

Open Data

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Tools From This Provider (13)

Get Organism Attributesearch Query

Returns a list of xrefs and associated attributes that contain the query string for a given organism. Results are not restricted to exact matches. Optionally limit results to a specified number per...

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Get Organism Attributeset

Returns the supported attributes to the given Organism.

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Get Organism Attributes Systemcode Identifier

Returns the attributes for a given identifier, data source, organism. Optionally display only a specified attribute

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Get Organism Isfreesearchsupported

Returns true or false based on whether or not /{organism}/search/{query} is supported for a given organism.

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Get Organism Ismappingsupported Sourcesystemcode Targetsystemcode

Returns true or false based on whether or not /{organism}/xrefs/{systemCode}/{identifier} would possibly return a {targetSystemCode} result given a {sourceSystemCode} query. This function...

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Get Organism Properties

Returns the list of properties available for a given organism

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Get Organism Search Query

Returns a list of xrefs with identifiers that contain the query string for a given organism. Results are not restricted to exact matches. Optionally limit results to a specified number per data...

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